PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00206.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 2563aa    MW: 285779 Da    PI: 8.3173
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00206.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-0712331256326
                               S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                               +++Cr +  tG C  G++C+F H+
  Rsa1.0_00206.1_g00001.1 1233 RRPCRSYVLTGNCAAGPSCSFDHP 1256
                               68*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501049.621152IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.3E-1274180IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522001.01E-875154IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525406.25E-38169435IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009315.9E-17195441IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.8E-5207237IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003648.6E-20209224No hitNo description
PRINTSPR003648.6E-20285299No hitNo description
PRINTSPR003648.6E-20376390No hitNo description
SuperFamilySSF467857.89E-5412515IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.3002.8E-5463512IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520584.93E-33537782IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-27541780IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077253.0E-8599618IPR011713Leucine-rich repeat 3
PRINTSPR003648.6E-20688704No hitNo description
SuperFamilySSF520589.98E-14872983IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.3E-14875974IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5010312.27712301258IPR000571Zinc finger, CCCH-type
SMARTSM003560.008812311257IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-412331256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.80.10.108.3E-1414371444IPR032675Leucine-rich repeat domain, L domain-like
PfamPF079281.5E-4223002430IPR012501Vps54-likeVacuolar protein sorting-associated protein 54, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0042147Biological Processretrograde transport, endosome to Golgi
GO:0000139Cellular ComponentGolgi membrane
GO:0000938Cellular ComponentGARP complex
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2563 aa     Download sequence    Send to blast
MDRLLALRRQ GSPDFEPSLP PRFVDRIIID RMKKPSNRRG ISRGRLERWS SSFAEDLSPG  60
LRRDILHQLR LQRVAISMNF AHSRECLDGL LAIMDHLKAN DLVLVPVFLK VSVSDVRGQR  120
GSFGKAFTRL GNSVKASQVL KWKAAMIELT SITGYAYKKG DEVILAKNIV RDVCLPLSSQ  180
TNMKLRGTRL SLKSILSLLN RSQPSAPQIV GLWGMAGIGK TTITRGFFRT QAERYDVCYF  240
LPDFHLMCQT KGLSYLRDEF FSKVFGAEKV FIDACDTKLS FTRDRFLGKK VLIVLDGVSS  300
ARDAEVLVGG FGWFSGGHTI IFTSRNRQVL VQCNAREIYE IEKLSKHESL HLCSTVATKE  360
KWKGKMWLTS ELVNYASGNP LALRVLGLPI QKQSIEDVKQ QLRRLRQHPP IEIQNAFRIS  420
FSERDDDEKS IFLDLACFFR GESKDQVVNI LDGCGFSTDL GICGLIDESL ISLVDNKIEM  480
PNIFQDVGRF IICQEDKEAG KRSRLWDSSD IAGVLTHNTG TEAIEGIFLD ASSLTFDLSS  540
TAFERMYRLR LLKLHCLTSV NYCKVCLPEG LHSLPDELRL LHWERYPLGS LPRNFNPKNL  600
VELNMPYSNL TKVWKGTKNL VKLKRIILSH SQQLTKFPRL SKARNLEHID LEGCTSLVKV  660
NSSILHHQKL TFLNLKNCSR LRVMPTTTNL KSLEVLNLSG CSELENLQDL SSNLKELYLA  720
GTAIRGMPSS IGDLTRLVTL DLENCESLQH LPPGISNLKA MMTLKLSGCS NLKSLPVLDA  780
LFLQDSQRPN TRITMEESVS ISLHSAIQES RLDGSETLLN LDNFQLRSDI HGSCFSREPV  840
EEFLPSFEYP SNNGISQESW TRAATVIPFP SSILNSLASR LYALVSLFLC NAYLVDIPED  900
ICWLASLRRL DLGGNSFSQI PKSIKEFRKL HSLRLCHCKN LKSLPELPRS LVILNAHGCV  960
SLKSFPSSFE QFPRHYTFSN CFNLSPKVVR KYIGKALDSV KGMSKGRILE ASMEQEHEHL  1020
NAPAFSICIP ASAGHQSSVN LQAGSSVRIQ LAPGMLNTLS GFVLSIVVEF GDNYSNTSGF  1080
AIKCICRKTT TDLSPRLERI FQCWAPREPT TVRRDHMFVF GSLKMHHAEA INHDFLSDSV  1140
TFEFHPVNSE NQLLGDSCTV KRCGVCLITD ATSNTTLSAK RPSSSMDHSG GLSGMEQVAP  1200
PYKRCRLKRV IEIVILSLRK RKREMSVPTS MVRRPCRSYV LTGNCAAGPS CSFDHPTWLL  1260
THKTASSIPS ESPRRDILGL SSYGKPSDKR VETSTEKRKR LSVSESRQAT AGTEQEEDGL  1320
KRKETRTQCL WRQTVISFIL QVHLGPVSAR FEHDLGPILS SRMREKSWAL TRFRRLDFLR  1380
RMEQKSLEIA MDPNHYARAY MNPHCSTSPP SPPIEPSHLS LNPEGFLSPP QTLPRVLTSL  1440
QIQNLTILVT KENYNLDSIR FTLFEIQLFP RSHFVSVHDI DSVRDLMDSH PSLVGRSIGN  1500
SNRSSVDLGR STPSSPSPSS LTKSISDASS QSLSSILNNP HGGKSGVYGT DASWVGWWSS  1560
STSVAPSEFA PVASAKLPGS DLARSDFHGY VSSISDSHAR FEDIINHARE ESSGLDQESH  1620
VSGLASCLRE VPSLYFKEDF ALEDGATFRS ACPFSSLTEN LALQEKLSQY LDVVEMHLVK  1680
EISVRSDSFF EAQGQLQDLN GKIVEGCSRI RELKETIRLL DRNLVDSARQ IQELSSTRIN  1740
MLELQRKLRV ILYVNQALSA LKLLVASADC AGALDITDDL QNLFAGDELT GLHCFRHLRD  1800
HVTTSIESIN SYGLFIANSI SAICKGHCFL LILTAEFMRI SIHNTGEIDV LILSAAKKRG  1860
SISSNGQTGD EVKLEEEDTS TLCDRLLPLV IGLLRTAKFP SILRMYREAL TSEMKNAIKN  1920
AVAELLPVLV ARSLESDFSH GERSVDVDES ILIRSAFTGG GLSLASKLRA LSSEAFVNLL  1980
TAIYRIVQAH LVRASEVKKA IEWILCNIDG HYAADSVAAA IAVGAVAAES IQEAGFQGEP  2040
SVSSPLGKAT SKASQLQRKS SDTSSLINMS RNFRADVLRE NTEAVFAACE VTHARWAKLL  2100
GVRALLHPKL KLQEFMSIYD LTQEFITATE KIGGRLGSSI RGTLQSQAKA FVDSQHEARR  2160
SVELYLLHPV DMTKLKAVLD QETWDEIDVP EEFQSIISSL FASQQLISRK ADDADTITYH  2220
RNPLTPNGSL TSGTEDQSTE LRNENSESSE GPAVSSAQVK STVSPESLER SKAGVSSVAN  2280
NQSNQKAHGK SNLFYQGVGY HMVNCGLILL KMLSEYIDMS NSLPALSSEV VLRVVEVLRF  2340
FNTRTCQLVL GAGAMQVSGL KSIKAKHLAL ASQVIDFTYT IIPESRRILF SKVPETRKPL  2400
LSVEIDRVAQ DYRVHRDEIY AKLVQIMRER LLAHLHGLPK VVESWNRPPD SNKQTKEFAW  2460
PLTREVGYLH RVLSETLHEA DVKAIFRQVI SIIHTQTSQT LSNLEISSPE AKKRLKLHVE  2520
LILKCIRSLP SDNANESGIP NWGQLDEFFA QHFKEEEEGG EAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111581162TVKRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0937620.0AY093762.1 Arabidopsis thaliana AT4g19490/F24J7_50 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132855.10.0PREDICTED: probable WRKY transcription factor 19 isoform X2
TrEMBLA0A078CQE20.0A0A078CQE2_BRANA; BnaA01g10040D protein
STRINGBra013400.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM919722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.11e-161Disease resistance protein (TIR-NBS-LRR class)